Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.64■□□□□ 0.58
KRT39Q6A163 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
KRT39Q6A163 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
KRT39Q6A163 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
KRT39Q6A163 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
KRT39Q6A163 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.64■□□□□ 0.57
KRT39Q6A163 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.64■□□□□ 0.57
KRT39Q6A163 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 AC064862.7-201ENST00000604520 867 ntBASIC18.64■□□□□ 0.57
KRT39Q6A163 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.64■□□□□ 0.57
KRT39Q6A163 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.64■□□□□ 0.57
KRT39Q6A163 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
KRT39Q6A163 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 AC092053.1-201ENST00000605787 1936 ntBASIC18.64■□□□□ 0.57
KRT39Q6A163 NCF1C-201ENST00000438382 1427 ntBASIC18.64■□□□□ 0.57
KRT39Q6A163 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 GPR89P-201ENST00000407924 1495 ntBASIC18.64■□□□□ 0.57
KRT39Q6A163 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
KRT39Q6A163 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
KRT39Q6A163 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
KRT39Q6A163 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 AC060834.1-201ENST00000443027 2032 ntBASIC18.63■□□□□ 0.57
KRT39Q6A163 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.63■□□□□ 0.57
KRT39Q6A163 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.63■□□□□ 0.57
KRT39Q6A163 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
KRT39Q6A163 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 EMBP1-201ENST00000458200 901 ntBASIC18.63■□□□□ 0.57
KRT39Q6A163 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.63■□□□□ 0.57
KRT39Q6A163 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 MTDHP4-201ENST00000600287 670 ntBASIC18.63■□□□□ 0.57
KRT39Q6A163 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 AL589182.2-201ENST00000619332 1049 ntBASIC18.63■□□□□ 0.57
KRT39Q6A163 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
KRT39Q6A163 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
KRT39Q6A163 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
KRT39Q6A163 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
KRT39Q6A163 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.62■□□□□ 0.57
KRT39Q6A163 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
KRT39Q6A163 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.62■□□□□ 0.57
KRT39Q6A163 AL450487.1-201ENST00000426799 995 ntBASIC18.62■□□□□ 0.57
KRT39Q6A163 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.62■□□□□ 0.57
KRT39Q6A163 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.62■□□□□ 0.57
KRT39Q6A163 AC124947.2-201ENST00000547118 1133 ntBASIC18.62■□□□□ 0.57
KRT39Q6A163 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.62■□□□□ 0.57
KRT39Q6A163 AL353135.1-201ENST00000606729 504 ntBASIC18.62■□□□□ 0.57
KRT39Q6A163 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
KRT39Q6A163 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.62■□□□□ 0.57
KRT39Q6A163 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
KRT39Q6A163 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
KRT39Q6A163 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
KRT39Q6A163 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
KRT39Q6A163 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
KRT39Q6A163 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
KRT39Q6A163 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
KRT39Q6A163 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.61■□□□□ 0.57
KRT39Q6A163 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
KRT39Q6A163 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
KRT39Q6A163 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
KRT39Q6A163 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
KRT39Q6A163 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms