Protein–RNA interactions for Protein: Q5VTQ0

TTC39B, Tetratricopeptide repeat protein 39B, humanhuman

Predicted RBP Predictions only

Length 682 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39BQ5VTQ0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
TTC39BQ5VTQ0 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TTC39BQ5VTQ0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TTC39BQ5VTQ0 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TTC39BQ5VTQ0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TTC39BQ5VTQ0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 AC021087.4-201ENST00000563761 564 ntBASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 MTDHP4-201ENST00000600287 670 ntBASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC39BQ5VTQ0 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 AC009336.1-201ENST00000608941 1553 ntBASIC18■□□□□ 0.47
TTC39BQ5VTQ0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MRPL3P1-201ENST00000400109 1033 ntBASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MOK-208ENST00000519058 917 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 LINC00304-203ENST00000565008 1864 ntBASIC18■□□□□ 0.47
TTC39BQ5VTQ0 HLA-J-201ENST00000462773 1622 ntBASIC18■□□□□ 0.47
TTC39BQ5VTQ0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC39BQ5VTQ0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC39BQ5VTQ0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC39BQ5VTQ0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.99■□□□□ 0.47
TTC39BQ5VTQ0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms