Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL139424.1-201ENST00000607572 797 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 UBALD1-205ENST00000590891 2641 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 AL118508.1-201ENST00000613502 2345 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AC112482.1-201ENST00000492080 688 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AC122714.2-201ENST00000502787 707 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 RNA5SP416-201ENST00000516838 111 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AD001527.2-201ENST00000622994 785 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 AC073592.4-201ENST00000623827 446 ntBASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC144BQ3MJ40 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC144BQ3MJ40 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 KRT18P27-201ENST00000427733 1299 ntBASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 KRT8P47-201ENST00000604727 1398 ntBASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC144BQ3MJ40 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CCDC144BQ3MJ40 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms