Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 PMPCAP1-201ENST00000508114 1576 ntBASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 KLF4P1-201ENST00000412782 1185 ntBASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 MTDHP3-201ENST00000594186 672 ntBASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD3Q3KNS1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTCHD3Q3KNS1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PTCHD3Q3KNS1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTCHD3Q3KNS1 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 SLC25A1P3-201ENST00000395415 828 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AL022342.1-201ENST00000400363 863 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AL355877.3-201ENST00000622820 899 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AC148477.8-201ENST00000624298 468 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AP000867.4-201ENST00000641616 219 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 AC093525.9-201ENST00000624961 1746 ntBASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
PTCHD3Q3KNS1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 AC064862.7-201ENST00000604520 867 ntBASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 AL773604.1-201ENST00000617417 272 ntBASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms