Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
UBA52P62987 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 AGGF1P2-201ENST00000426656 2106 ntBASIC14.98□□□□□ -0.01
UBA52P62987 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
UBA52P62987 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.98□□□□□ -0.01
UBA52P62987 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.98□□□□□ -0.01
UBA52P62987 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
UBA52P62987 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.97□□□□□ -0.01
UBA52P62987 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 TSPY22P-201ENST00000427496 604 ntBASIC14.97□□□□□ -0.01
UBA52P62987 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 IFNL4P1-201ENST00000607083 540 ntBASIC14.97□□□□□ -0.01
UBA52P62987 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
UBA52P62987 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.97□□□□□ -0.01
UBA52P62987 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.97□□□□□ -0.01
UBA52P62987 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.97□□□□□ -0.01
UBA52P62987 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBA52P62987 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
UBA52P62987 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 AC008741.2-201ENST00000612792 3115 ntBASIC14.96□□□□□ -0.01
UBA52P62987 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.96□□□□□ -0.01
UBA52P62987 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.96□□□□□ -0.01
UBA52P62987 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.96□□□□□ -0.01
UBA52P62987 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.96□□□□□ -0.01
UBA52P62987 MIR3917-201ENST00000580971 93 ntBASIC14.96□□□□□ -0.01
UBA52P62987 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
UBA52P62987 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
UBA52P62987 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
UBA52P62987 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
UBA52P62987 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
UBA52P62987 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
UBA52P62987 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
UBA52P62987 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
UBA52P62987 AL391807.1-203ENST00000604392 2365 ntBASIC14.96□□□□□ -0.02
UBA52P62987 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.96□□□□□ -0.02
UBA52P62987 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
UBA52P62987 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms