Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 ABHD17AP1-201ENST00000358206 933 ntBASIC12.26□□□□□ -0.45
RPL39P62891 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC12.26□□□□□ -0.45
RPL39P62891 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 SLC25A1P3-201ENST00000395415 828 ntBASIC12.26□□□□□ -0.45
RPL39P62891 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 PVRIG2P-201ENST00000435460 978 ntBASIC12.26□□□□□ -0.45
RPL39P62891 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC12.26□□□□□ -0.45
RPL39P62891 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 IRX5-204ENST00000560154 879 ntTSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC12.26□□□□□ -0.45
RPL39P62891 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.26□□□□□ -0.45
RPL39P62891 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 AC116562.4-202ENST00000641738 218 ntBASIC12.26□□□□□ -0.45
RPL39P62891 AC092865.7-201ENST00000641832 219 ntBASIC12.26□□□□□ -0.45
RPL39P62891 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.26□□□□□ -0.45
RPL39P62891 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
RPL39P62891 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPL39P62891 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
RPL39P62891 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 AC092364.2-201ENST00000596710 2692 ntBASIC12.25□□□□□ -0.45
RPL39P62891 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
RPL39P62891 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC12.25□□□□□ -0.45
RPL39P62891 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 AC009947.2-201ENST00000444014 672 ntBASIC12.25□□□□□ -0.45
RPL39P62891 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC12.25□□□□□ -0.45
RPL39P62891 MIR4651-201ENST00000582622 73 ntBASIC12.25□□□□□ -0.45
RPL39P62891 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC12.25□□□□□ -0.45
RPL39P62891 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
RPL39P62891 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPL39P62891 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 CYP2T1P-202ENST00000641596 2535 ntBASIC12.25□□□□□ -0.45
RPL39P62891 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
RPL39P62891 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
RPL39P62891 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RPL39P62891 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RPL39P62891 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RPL39P62891 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RPL39P62891 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPL39P62891 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms