Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 HCG4P8-203ENST00000443049 980 ntBASIC15.46■□□□□ 0.07
CLRN1P58418 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.46■□□□□ 0.07
CLRN1P58418 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CLRN1P58418 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN1P58418 AC116353.5-201ENST00000638148 1699 ntBASIC15.46■□□□□ 0.07
CLRN1P58418 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.46■□□□□ 0.07
CLRN1P58418 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN1P58418 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.06
CLRN1P58418 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN1P58418 AC093525.9-201ENST00000624961 1746 ntBASIC15.46■□□□□ 0.06
CLRN1P58418 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 AC132938.5-201ENST00000624980 1813 ntBASIC15.45■□□□□ 0.06
CLRN1P58418 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
CLRN1P58418 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.45■□□□□ 0.06
CLRN1P58418 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.45■□□□□ 0.06
CLRN1P58418 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 AL591684.3-201ENST00000605187 298 ntBASIC15.45■□□□□ 0.06
CLRN1P58418 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN1P58418 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN1P58418 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN1P58418 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN1P58418 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN1P58418 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CLRN1P58418 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CLRN1P58418 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.44■□□□□ 0.06
CLRN1P58418 MIR3652-201ENST00000579335 131 ntBASIC15.44■□□□□ 0.06
CLRN1P58418 MIR5100-201ENST00000579544 119 ntBASIC15.44■□□□□ 0.06
CLRN1P58418 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.44■□□□□ 0.06
CLRN1P58418 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CLRN1P58418 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.44■□□□□ 0.06
CLRN1P58418 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms