Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
FOXA1P55317 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.73■□□□□ 0.27
FOXA1P55317 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.72■□□□□ 0.27
FOXA1P55317 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.72■□□□□ 0.27
FOXA1P55317 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 FRMD8P1-201ENST00000440433 1524 ntBASIC16.72■□□□□ 0.27
FOXA1P55317 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 CHCHD2P8-201ENST00000429873 447 ntBASIC16.72■□□□□ 0.27
FOXA1P55317 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.72■□□□□ 0.27
FOXA1P55317 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 BX276092.5-203ENST00000456199 560 ntBASIC16.72■□□□□ 0.27
FOXA1P55317 FAM86EP-206ENST00000510506 987 ntBASIC16.72■□□□□ 0.27
FOXA1P55317 AC009533.2-201ENST00000543664 586 ntBASIC16.72■□□□□ 0.27
FOXA1P55317 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
FOXA1P55317 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.72■□□□□ 0.27
FOXA1P55317 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
FOXA1P55317 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA1P55317 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.72■□□□□ 0.27
FOXA1P55317 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
FOXA1P55317 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.71■□□□□ 0.27
FOXA1P55317 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
FOXA1P55317 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
FOXA1P55317 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA1P55317 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.71■□□□□ 0.27
FOXA1P55317 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.71■□□□□ 0.27
FOXA1P55317 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA1P55317 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA1P55317 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.71■□□□□ 0.27
FOXA1P55317 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 AL121672.3-201ENST00000608644 468 ntBASIC16.71■□□□□ 0.27
FOXA1P55317 AL121956.5-201ENST00000625261 221 ntBASIC16.71■□□□□ 0.27
FOXA1P55317 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
FOXA1P55317 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA1P55317 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA1P55317 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
FOXA1P55317 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
FOXA1P55317 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 TP73-AS1-210ENST00000637775 1455 ntBASIC16.7■□□□□ 0.26
FOXA1P55317 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
FOXA1P55317 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.7■□□□□ 0.26
FOXA1P55317 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.7■□□□□ 0.26
FOXA1P55317 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms