Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 AC006116.8-202ENST00000587620 1550 ntBASIC18.22■□□□□ 0.51
LIG3P49916 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.22■□□□□ 0.51
LIG3P49916 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.22■□□□□ 0.51
LIG3P49916 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 AC008687.5-201ENST00000593746 558 ntBASIC18.22■□□□□ 0.51
LIG3P49916 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.22■□□□□ 0.51
LIG3P49916 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.22■□□□□ 0.51
LIG3P49916 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.22■□□□□ 0.51
LIG3P49916 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
LIG3P49916 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 AL353692.3-201ENST00000407031 1396 ntBASIC18.21■□□□□ 0.51
LIG3P49916 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.21■□□□□ 0.51
LIG3P49916 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIG3P49916 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.21■□□□□ 0.51
LIG3P49916 MIR3180-1-201ENST00000580374 94 ntBASIC18.21■□□□□ 0.51
LIG3P49916 MIR3180-3-201ENST00000584616 94 ntBASIC18.21■□□□□ 0.51
LIG3P49916 AP002414.4-201ENST00000589764 1148 ntBASIC18.21■□□□□ 0.51
LIG3P49916 AC092329.2-201ENST00000598402 547 ntBASIC18.21■□□□□ 0.51
LIG3P49916 AC004263.2-201ENST00000617183 678 ntBASIC18.21■□□□□ 0.51
LIG3P49916 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LIG3P49916 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.21■□□□□ 0.51
LIG3P49916 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIG3P49916 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIG3P49916 KRT18P1-202ENST00000452408 1331 ntBASIC18.21■□□□□ 0.51
LIG3P49916 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LIG3P49916 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
LIG3P49916 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.2■□□□□ 0.5
LIG3P49916 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIG3P49916 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.2■□□□□ 0.5
LIG3P49916 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.2■□□□□ 0.5
LIG3P49916 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 AC090616.6-201ENST00000582640 721 ntBASIC18.2■□□□□ 0.5
LIG3P49916 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 IGHV3-41-201ENST00000613121 348 ntBASIC18.2■□□□□ 0.5
LIG3P49916 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIG3P49916 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.2■□□□□ 0.5
LIG3P49916 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIG3P49916 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIG3P49916 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms