Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SOX2P48431 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.25■□□□□ 0.03
SOX2P48431 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SOX2P48431 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 MTCL1P1-201ENST00000446207 792 ntBASIC15.25■□□□□ 0.03
SOX2P48431 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX2P48431 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX2P48431 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX2P48431 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.25■□□□□ 0.03
SOX2P48431 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SOX2P48431 FLJ16779-201ENST00000612722 7638 ntBASIC15.25■□□□□ 0.03
SOX2P48431 AC092171.3-201ENST00000610122 2651 ntBASIC15.25■□□□□ 0.03
SOX2P48431 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX2P48431 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SOX2P48431 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.24■□□□□ 0.03
SOX2P48431 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 AL603756.1-201ENST00000606511 2163 ntBASIC15.24■□□□□ 0.03
SOX2P48431 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SOX2P48431 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 AL138966.2-201ENST00000621997 464 ntBASIC15.24■□□□□ 0.03
SOX2P48431 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 CICP6-201ENST00000457191 2729 ntBASIC15.24■□□□□ 0.03
SOX2P48431 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SOX2P48431 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.24■□□□□ 0.03
SOX2P48431 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SOX2P48431 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX2P48431 KRT18P22-201ENST00000402024 1347 ntBASIC15.23■□□□□ 0.03
SOX2P48431 AL139384.1-201ENST00000612143 3047 ntBASIC15.23■□□□□ 0.03
SOX2P48431 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms