Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.95■□□□□ 0.3
SHMT2P34897 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 KRT18P67-201ENST00000432816 1264 ntBASIC16.94■□□□□ 0.3
SHMT2P34897 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
SHMT2P34897 SIGLEC30P-201ENST00000455569 941 ntBASIC16.94■□□□□ 0.3
SHMT2P34897 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.94■□□□□ 0.3
SHMT2P34897 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.94■□□□□ 0.3
SHMT2P34897 AL662844.1-201ENST00000546340 181 ntBASIC16.94■□□□□ 0.3
SHMT2P34897 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.94■□□□□ 0.3
SHMT2P34897 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.94■□□□□ 0.3
SHMT2P34897 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHMT2P34897 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SHMT2P34897 AL355312.1-201ENST00000407115 2176 ntBASIC16.94■□□□□ 0.3
SHMT2P34897 AC009336.1-201ENST00000608941 1553 ntBASIC16.94■□□□□ 0.3
SHMT2P34897 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SHMT2P34897 AL023806.1-201ENST00000603994 1649 ntBASIC16.93■□□□□ 0.3
SHMT2P34897 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.93■□□□□ 0.3
SHMT2P34897 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.93■□□□□ 0.3
SHMT2P34897 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.93■□□□□ 0.3
SHMT2P34897 PRYP5-201ENST00000451909 266 ntBASIC16.93■□□□□ 0.3
SHMT2P34897 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.93■□□□□ 0.3
SHMT2P34897 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 AL139327.4-201ENST00000612362 153 ntBASIC16.93■□□□□ 0.3
SHMT2P34897 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 AL118508.1-201ENST00000613502 2345 ntBASIC16.93■□□□□ 0.3
SHMT2P34897 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.93■□□□□ 0.3
SHMT2P34897 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.93■□□□□ 0.3
SHMT2P34897 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHMT2P34897 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.93■□□□□ 0.3
SHMT2P34897 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHMT2P34897 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms