Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.71■□□□□ 0.59
RNF40O75150 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
RNF40O75150 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.71■□□□□ 0.59
RNF40O75150 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RNF40O75150 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.71■□□□□ 0.58
RNF40O75150 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RNF40O75150 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.7■□□□□ 0.58
RNF40O75150 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 SAPCD2P3-201ENST00000455031 850 ntBASIC18.7■□□□□ 0.58
RNF40O75150 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.7■□□□□ 0.58
RNF40O75150 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.7■□□□□ 0.58
RNF40O75150 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.7■□□□□ 0.58
RNF40O75150 AC004263.2-201ENST00000617183 678 ntBASIC18.7■□□□□ 0.58
RNF40O75150 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.7■□□□□ 0.58
RNF40O75150 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RNF40O75150 FLJ38576-201ENST00000623820 2459 ntBASIC18.69■□□□□ 0.58
RNF40O75150 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF40O75150 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RNF40O75150 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
RNF40O75150 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.69■□□□□ 0.58
RNF40O75150 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.69■□□□□ 0.58
RNF40O75150 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 TSPY12P-201ENST00000421279 868 ntBASIC18.69■□□□□ 0.58
RNF40O75150 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF40O75150 GPALPP1-207ENST00000611650 899 ntBASIC18.69■□□□□ 0.58
RNF40O75150 REXO1L6P-202ENST00000619970 1078 ntBASIC18.69■□□□□ 0.58
RNF40O75150 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RNF40O75150 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
RNF40O75150 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 HLA-A-201ENST00000376802 1334 ntBASIC18.69■□□□□ 0.58
RNF40O75150 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RNF40O75150 KRT18P55-202ENST00000578578 1546 ntBASIC18.69■□□□□ 0.58
RNF40O75150 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.69■□□□□ 0.58
RNF40O75150 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNF40O75150 AL138688.1-201ENST00000624851 1594 ntBASIC18.68■□□□□ 0.58
RNF40O75150 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNF40O75150 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RNF40O75150 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.68■□□□□ 0.58
RNF40O75150 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF40O75150 MINOS1P3-201ENST00000457048 203 ntBASIC18.68■□□□□ 0.58
RNF40O75150 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
RNF40O75150 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 AC120114.3-201ENST00000611923 658 ntBASIC18.68■□□□□ 0.58
RNF40O75150 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNF40O75150 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RNF40O75150 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF40O75150 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNF40O75150 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RNF40O75150 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF40O75150 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
RNF40O75150 KRT89P-201ENST00000620027 1478 ntBASIC18.67■□□□□ 0.58
RNF40O75150 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms