Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.96□□□□□ -0.17
HMGB3O15347 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.96□□□□□ -0.17
HMGB3O15347 AL662844.4-201ENST00000606367 2838 ntBASIC13.96□□□□□ -0.17
HMGB3O15347 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
HMGB3O15347 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.96□□□□□ -0.18
HMGB3O15347 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
HMGB3O15347 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
HMGB3O15347 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HMGB3O15347 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HMGB3O15347 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 AL731571.1-201ENST00000617058 5428 ntBASIC13.95□□□□□ -0.18
HMGB3O15347 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 LY6E-205ENST00000519611 635 ntTSL 3 BASIC13.95□□□□□ -0.18
HMGB3O15347 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC13.95□□□□□ -0.18
HMGB3O15347 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC13.95□□□□□ -0.18
HMGB3O15347 MIR3180-5-201ENST00000583743 153 ntBASIC13.95□□□□□ -0.18
HMGB3O15347 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HMGB3O15347 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 KRT16P1-201ENST00000399124 1418 ntBASIC13.95□□□□□ -0.18
HMGB3O15347 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
HMGB3O15347 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HMGB3O15347 AC092171.3-201ENST00000610122 2651 ntBASIC13.95□□□□□ -0.18
HMGB3O15347 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HMGB3O15347 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HMGB3O15347 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 REXO1L11P-201ENST00000620964 1927 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.94□□□□□ -0.18
HMGB3O15347 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 MAP2K4P1-201ENST00000438453 1195 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 KSR1P1-201ENST00000446298 240 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 AC011506.1-201ENST00000474329 610 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC13.94□□□□□ -0.18
HMGB3O15347 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HMGB3O15347 AC130371.2-201ENST00000619443 611 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms