Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC105917.1-201ENST00000506637 2539 ntBASIC12.67□□□□□ -0.38
SMKR1H3BMG3 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 WWOX-216ENST00000569818 525 ntBASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DGCR10-201ENST00000609839 495 ntBASIC12.67□□□□□ -0.38
SMKR1H3BMG3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 AC022188.1-201ENST00000620960 1664 ntBASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
SMKR1H3BMG3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC092850.2-201ENST00000623821 2697 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC093525.9-201ENST00000624961 1746 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ESRRAP1-201ENST00000400596 1257 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AL355802.2-201ENST00000402069 882 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 C1QBPP2-201ENST00000528754 825 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 AC073648.6-201ENST00000641589 218 ntBASIC12.66□□□□□ -0.38
SMKR1H3BMG3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.66□□□□□ -0.38
SMKR1H3BMG3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms