Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 AC092933.1-201ENST00000393644 945 ntBASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.59□□□□□ -0.07
CSMD1Q96PZ7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.58□□□□□ -0.07
CSMD1Q96PZ7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ANKRD19P-201ENST00000338192 862 ntBASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AL512638.1-201ENST00000457493 794 ntBASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD1Q96PZ7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 AC022210.1-201ENST00000449856 793 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 SNX29P1-201ENST00000548357 1007 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 RAB43P1-201ENST00000561790 589 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 ELK2AP-201ENST00000392510 1007 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 RN7SL752P-201ENST00000463779 287 ntBASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD1Q96PZ7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms