Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 AC022211.2-201ENST00000585075 2527 ntBASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 PCDHA12-202ENST00000613593 2588 ntBASIC16.33■□□□□ 0.2
CCDC116Q8IYX3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC116Q8IYX3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 AL020989.1-201ENST00000422979 469 ntBASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 AL732292.2-201ENST00000609649 430 ntBASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC116Q8IYX3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 AC148477.5-201ENST00000625164 1645 ntBASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC116Q8IYX3 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms