Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC107918.2-201ENST00000530817 355 ntBASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC026120.1-201ENST00000611536 926 ntBASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC009093.7-201ENST00000623853 1223 ntBASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS3Q8IXF0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AC140658.5-201ENST00000438532 169 ntBASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AC005498.2-205ENST00000593218 784 ntBASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS3Q8IXF0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 HCG11-201ENST00000411553 5696 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 AC138028.4-201ENST00000564984 1845 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 FAM86GP-201ENST00000448322 971 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 KRT8P48-201ENST00000515599 1220 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 AC079416.2-201ENST00000625035 1193 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 AL645728.2-201ENST00000641974 660 ntBASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS3Q8IXF0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms