Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 TUBB8P12-201ENST00000308911 1335 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 TUBB7P-202ENST00000428444 1305 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 TUBB8P7-204ENST00000567960 1332 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AL031133.1-201ENST00000406807 723 ntBASIC19.73■□□□□ 0.75
ATL3Q6DD88 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AP005901.3-202ENST00000581653 237 ntBASIC19.73■□□□□ 0.75
ATL3Q6DD88 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 PMPCAP1-201ENST00000508114 1576 ntBASIC19.73■□□□□ 0.75
ATL3Q6DD88 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATL3Q6DD88 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
ATL3Q6DD88 INTS4P1-201ENST00000438455 1935 ntBASIC19.72■□□□□ 0.75
ATL3Q6DD88 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 TNRC18P3-201ENST00000441896 2691 ntBASIC19.72■□□□□ 0.75
ATL3Q6DD88 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 ACTG1P4-201ENST00000425123 1122 ntBASIC19.72■□□□□ 0.75
ATL3Q6DD88 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
ATL3Q6DD88 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATL3Q6DD88 AC233702.3-201ENST00000578656 1387 ntBASIC19.71■□□□□ 0.75
ATL3Q6DD88 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 TMPOP1-202ENST00000424642 1267 ntBASIC19.71■□□□□ 0.75
ATL3Q6DD88 DRAXINP1-201ENST00000437611 948 ntBASIC19.71■□□□□ 0.75
ATL3Q6DD88 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 AC005332.1-201ENST00000577698 1310 ntBASIC19.71■□□□□ 0.75
ATL3Q6DD88 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.71■□□□□ 0.75
ATL3Q6DD88 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ATL3Q6DD88 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms