Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
KRT39Q6A163 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.68■□□□□ 0.58
KRT39Q6A163 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
KRT39Q6A163 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.67■□□□□ 0.58
KRT39Q6A163 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.67■□□□□ 0.58
KRT39Q6A163 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
KRT39Q6A163 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.67■□□□□ 0.58
KRT39Q6A163 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.67■□□□□ 0.58
KRT39Q6A163 LINC00982-205ENST00000420957 435 ntBASIC18.67■□□□□ 0.58
KRT39Q6A163 SCARNA2-201ENST00000458748 420 ntBASIC18.67■□□□□ 0.58
KRT39Q6A163 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.67■□□□□ 0.58
KRT39Q6A163 SART3-203ENST00000546611 1184 ntBASIC18.67■□□□□ 0.58
KRT39Q6A163 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.67■□□□□ 0.58
KRT39Q6A163 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.67■□□□□ 0.58
KRT39Q6A163 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.67■□□□□ 0.58
KRT39Q6A163 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
KRT39Q6A163 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
KRT39Q6A163 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KRT39Q6A163 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.67■□□□□ 0.58
KRT39Q6A163 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
KRT39Q6A163 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.66■□□□□ 0.58
KRT39Q6A163 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.66■□□□□ 0.58
KRT39Q6A163 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
KRT39Q6A163 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KRT39Q6A163 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.66■□□□□ 0.58
KRT39Q6A163 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
KRT39Q6A163 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
KRT39Q6A163 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.65■□□□□ 0.58
KRT39Q6A163 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
KRT39Q6A163 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.65■□□□□ 0.58
KRT39Q6A163 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
KRT39Q6A163 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.65■□□□□ 0.58
KRT39Q6A163 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
KRT39Q6A163 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.65■□□□□ 0.58
KRT39Q6A163 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms