Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 FAM197Y8-203ENST00000450145 560 ntBASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 STK19B-204ENST00000512515 211 ntBASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 AC073592.5-201ENST00000624854 528 ntBASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD3Q3KNS1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AC009336.1-201ENST00000608941 1553 ntBASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AC003669.1-201ENST00000334569 611 ntBASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 AP001269.4-201ENST00000609611 512 ntBASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 HLA-A-201ENST00000376802 1334 ntBASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.91■□□□□ 0.3
PTCHD3Q3KNS1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms