Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 CROCCP2-202ENST00000412962 2773 ntBASIC13.3□□□□□ -0.28
HIST1H1AQ02539 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 AC117947.1-201ENST00000427448 529 ntBASIC13.3□□□□□ -0.28
HIST1H1AQ02539 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 AC092597.1-201ENST00000487352 616 ntBASIC13.3□□□□□ -0.28
HIST1H1AQ02539 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 TK2-213ENST00000563369 882 ntTSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 AC009154.2-201ENST00000621177 724 ntBASIC13.3□□□□□ -0.28
HIST1H1AQ02539 AC097493.4-201ENST00000641197 219 ntBASIC13.3□□□□□ -0.28
HIST1H1AQ02539 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIST1H1AQ02539 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 LINC00304-203ENST00000565008 1864 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 HLA-F-220ENST00000434407 884 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 DDX43P3-201ENST00000441064 443 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 HOMER2P1-201ENST00000455653 964 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 KRT8P47-201ENST00000604727 1398 ntBASIC13.29□□□□□ -0.28
HIST1H1AQ02539 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
HIST1H1AQ02539 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms