Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC10.56□□□□□ -0.72
HSPG2P98160 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC10.56□□□□□ -0.72
HSPG2P98160 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
HSPG2P98160 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 AC098850.1-201ENST00000419919 790 ntBASIC10.55□□□□□ -0.72
HSPG2P98160 CD81-207ENST00000481687 890 ntTSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 AC093004.1-201ENST00000508850 424 ntBASIC10.55□□□□□ -0.72
HSPG2P98160 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC10.55□□□□□ -0.72
HSPG2P98160 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC10.55□□□□□ -0.72
HSPG2P98160 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC10.55□□□□□ -0.72
HSPG2P98160 AC243960.2-201ENST00000600996 747 ntBASIC10.55□□□□□ -0.72
HSPG2P98160 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 EFTUD1P1-204ENST00000560401 1798 ntBASIC10.55□□□□□ -0.72
HSPG2P98160 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC10.55□□□□□ -0.72
HSPG2P98160 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
HSPG2P98160 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC10.55□□□□□ -0.72
HSPG2P98160 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC10.55□□□□□ -0.72
HSPG2P98160 RN7SL190P-201ENST00000582519 257 ntBASIC10.55□□□□□ -0.72
HSPG2P98160 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
HSPG2P98160 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
HSPG2P98160 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
HSPG2P98160 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 AC018665.1-201ENST00000622927 1362 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC002558.1-201ENST00000488906 803 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 AL021578.1-201ENST00000613646 709 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC10.54□□□□□ -0.72
HSPG2P98160 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 GRAMD4P3-201ENST00000621665 1669 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 AC011495.1-201ENST00000498085 584 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 BX276092.7-203ENST00000637198 1536 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC10.54□□□□□ -0.72
HSPG2P98160 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC012569.1-201ENST00000591191 1524 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 AC108725.1-201ENST00000495472 409 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC10.54□□□□□ -0.72
HSPG2P98160 AC133552.6-201ENST00000613406 534 ntBASIC10.54□□□□□ -0.72
HSPG2P98160 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
HSPG2P98160 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
HSPG2P98160 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 REXO1L11P-201ENST00000620964 1927 ntBASIC10.53□□□□□ -0.72
HSPG2P98160 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 NARF-206ENST00000457415 1668 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC10.53□□□□□ -0.72
HSPG2P98160 LITAF-210ENST00000571976 548 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 LITAF-214ENST00000574703 486 ntTSL 2 BASIC10.53□□□□□ -0.72
HSPG2P98160 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC10.53□□□□□ -0.72
HSPG2P98160 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
HSPG2P98160 PTGES2-AS1-201ENST00000443493 2100 ntBASIC10.53□□□□□ -0.72
HSPG2P98160 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms