Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 LINC02199-201ENST00000506655 2702 ntBASIC17.01■□□□□ 0.31
PKNOX1P55347 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PKNOX1P55347 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17■□□□□ 0.31
PKNOX1P55347 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 RHBDF1P1-201ENST00000427504 1941 ntBASIC17■□□□□ 0.31
PKNOX1P55347 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17■□□□□ 0.31
PKNOX1P55347 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 AC063952.2-201ENST00000498792 1227 ntBASIC17■□□□□ 0.31
PKNOX1P55347 IGHV3-52-201ENST00000519770 353 ntBASIC17■□□□□ 0.31
PKNOX1P55347 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17■□□□□ 0.31
PKNOX1P55347 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17■□□□□ 0.31
PKNOX1P55347 LINC01023-201ENST00000606054 436 ntBASIC17■□□□□ 0.31
PKNOX1P55347 AC083849.1-201ENST00000615227 514 ntBASIC17■□□□□ 0.31
PKNOX1P55347 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17■□□□□ 0.31
PKNOX1P55347 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PKNOX1P55347 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PKNOX1P55347 AL162727.3-201ENST00000635661 2787 ntBASIC17■□□□□ 0.31
PKNOX1P55347 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PKNOX1P55347 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 AC211429.1-201ENST00000415277 523 ntBASIC16.99■□□□□ 0.31
PKNOX1P55347 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.99■□□□□ 0.31
PKNOX1P55347 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.99■□□□□ 0.31
PKNOX1P55347 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.99■□□□□ 0.31
PKNOX1P55347 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.99■□□□□ 0.31
PKNOX1P55347 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.99■□□□□ 0.31
PKNOX1P55347 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PKNOX1P55347 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.99■□□□□ 0.31
PKNOX1P55347 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PKNOX1P55347 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.99■□□□□ 0.31
PKNOX1P55347 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PKNOX1P55347 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PKNOX1P55347 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.99■□□□□ 0.31
PKNOX1P55347 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PKNOX1P55347 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PKNOX1P55347 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.98■□□□□ 0.31
PKNOX1P55347 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms