Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 AC005332.1-201ENST00000577698 1310 ntBASIC16.75■□□□□ 0.27
FOXA1P55317 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
FOXA1P55317 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 AC246785.2-201ENST00000432512 513 ntBASIC16.75■□□□□ 0.27
FOXA1P55317 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.75■□□□□ 0.27
FOXA1P55317 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.75■□□□□ 0.27
FOXA1P55317 AC124947.2-201ENST00000547118 1133 ntBASIC16.75■□□□□ 0.27
FOXA1P55317 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
FOXA1P55317 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA1P55317 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 AC016734.2-201ENST00000624325 1377 ntBASIC16.75■□□□□ 0.27
FOXA1P55317 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA1P55317 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA1P55317 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
FOXA1P55317 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
FOXA1P55317 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.74■□□□□ 0.27
FOXA1P55317 STK19B-204ENST00000512515 211 ntBASIC16.74■□□□□ 0.27
FOXA1P55317 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
FOXA1P55317 NTF6B-201ENST00000591913 560 ntBASIC16.74■□□□□ 0.27
FOXA1P55317 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
FOXA1P55317 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA1P55317 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA1P55317 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
FOXA1P55317 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 AL603756.1-201ENST00000606511 2163 ntBASIC16.73■□□□□ 0.27
FOXA1P55317 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA1P55317 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
FOXA1P55317 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
FOXA1P55317 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 AC011467.2-201ENST00000598425 242 ntBASIC16.73■□□□□ 0.27
FOXA1P55317 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.73■□□□□ 0.27
FOXA1P55317 AD001527.2-201ENST00000622994 785 ntBASIC16.73■□□□□ 0.27
FOXA1P55317 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA1P55317 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA1P55317 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms