Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC22.53■■□□□ 1.2
COL18A1P39060 AC073389.1-201ENST00000595595 795 ntBASIC22.53■■□□□ 1.2
COL18A1P39060 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
COL18A1P39060 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.52■■□□□ 1.2
COL18A1P39060 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC22.52■■□□□ 1.2
COL18A1P39060 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC22.52■■□□□ 1.2
COL18A1P39060 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC22.52■■□□□ 1.2
COL18A1P39060 AC105233.2-201ENST00000523697 349 ntBASIC22.52■■□□□ 1.2
COL18A1P39060 AF228730.5-201ENST00000530288 346 ntBASIC22.52■■□□□ 1.2
COL18A1P39060 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC22.52■■□□□ 1.2
COL18A1P39060 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
COL18A1P39060 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL18A1P39060 AC004840.1-201ENST00000636359 365 ntBASIC22.52■■□□□ 1.2
COL18A1P39060 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.52■■□□□ 1.2
COL18A1P39060 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC22.52■■□□□ 1.2
COL18A1P39060 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL18A1P39060 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC22.51■■□□□ 1.19
COL18A1P39060 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC22.51■■□□□ 1.19
COL18A1P39060 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC22.51■■□□□ 1.19
COL18A1P39060 AL596325.1-201ENST00000563991 1082 ntBASIC22.51■■□□□ 1.19
COL18A1P39060 AC004790.1-201ENST00000612686 536 ntBASIC22.51■■□□□ 1.19
COL18A1P39060 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL18A1P39060 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
COL18A1P39060 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC22.51■■□□□ 1.19
COL18A1P39060 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
COL18A1P39060 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC22.5■■□□□ 1.19
COL18A1P39060 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC22.5■■□□□ 1.19
COL18A1P39060 LY6E-204ENST00000519546 971 ntTSL 2 BASIC22.5■■□□□ 1.19
COL18A1P39060 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC22.5■■□□□ 1.19
COL18A1P39060 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
COL18A1P39060 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL18A1P39060 AC009113.1-201ENST00000570267 2443 ntBASIC22.5■■□□□ 1.19
COL18A1P39060 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL18A1P39060 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.5■■□□□ 1.19
COL18A1P39060 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL18A1P39060 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL18A1P39060 GK-202ENST00000378941 458 ntTSL 3 BASIC22.5■■□□□ 1.19
COL18A1P39060 SPTLC1P1-201ENST00000447199 261 ntBASIC22.5■■□□□ 1.19
COL18A1P39060 COQ6-210ENST00000554920 649 ntTSL 3 BASIC22.5■■□□□ 1.19
COL18A1P39060 AC009118.2-201ENST00000613275 655 ntBASIC22.5■■□□□ 1.19
COL18A1P39060 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
COL18A1P39060 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL18A1P39060 AC131009.4-201ENST00000624048 1740 ntBASIC22.5■■□□□ 1.19
COL18A1P39060 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.5■■□□□ 1.19
COL18A1P39060 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL18A1P39060 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL18A1P39060 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC22.49■■□□□ 1.19
COL18A1P39060 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC22.49■■□□□ 1.19
COL18A1P39060 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC22.49■■□□□ 1.19
COL18A1P39060 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC22.49■■□□□ 1.19
COL18A1P39060 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC22.49■■□□□ 1.19
COL18A1P39060 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL18A1P39060 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC22.49■■□□□ 1.19
COL18A1P39060 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.49■■□□□ 1.19
COL18A1P39060 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL18A1P39060 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL18A1P39060 AP3S2-216ENST00000617003 1561 ntBASIC22.49■■□□□ 1.19
COL18A1P39060 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC22.48■■□□□ 1.19
COL18A1P39060 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC22.48■■□□□ 1.19
COL18A1P39060 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC22.48■■□□□ 1.19
COL18A1P39060 AL844908.2-201ENST00000609461 460 ntBASIC22.48■■□□□ 1.19
COL18A1P39060 AL662799.1-202ENST00000614205 422 ntBASIC22.48■■□□□ 1.19
COL18A1P39060 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC22.48■■□□□ 1.19
COL18A1P39060 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22.48■■□□□ 1.19
COL18A1P39060 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.48■■□□□ 1.19
COL18A1P39060 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL18A1P39060 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC22.48■■□□□ 1.19
COL18A1P39060 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC22.48■■□□□ 1.19
COL18A1P39060 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC22.48■■□□□ 1.19
COL18A1P39060 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms