Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.42■□□□□ 0.7
CIITAP33076 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CIITAP33076 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 AL023806.1-201ENST00000603994 1649 ntBASIC19.41■□□□□ 0.7
CIITAP33076 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CIITAP33076 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CIITAP33076 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 MRPL20P1-201ENST00000400819 433 ntBASIC19.41■□□□□ 0.7
CIITAP33076 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 VN2R19P-201ENST00000442399 1052 ntBASIC19.41■□□□□ 0.7
CIITAP33076 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
CIITAP33076 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CIITAP33076 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CIITAP33076 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.4■□□□□ 0.7
CIITAP33076 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.4■□□□□ 0.7
CIITAP33076 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 HCG4B-203ENST00000450128 991 ntBASIC19.4■□□□□ 0.7
CIITAP33076 AC087163.2-201ENST00000457299 853 ntBASIC19.4■□□□□ 0.7
CIITAP33076 SLC25A6P2-201ENST00000497974 877 ntBASIC19.4■□□□□ 0.7
CIITAP33076 KRT18P58-201ENST00000527480 1120 ntBASIC19.4■□□□□ 0.7
CIITAP33076 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.4■□□□□ 0.7
CIITAP33076 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 AC027601.4-201ENST00000611259 610 ntBASIC19.4■□□□□ 0.7
CIITAP33076 AC010654.1-201ENST00000615722 808 ntBASIC19.4■□□□□ 0.7
CIITAP33076 FAM197Y3-203ENST00000618346 717 ntBASIC19.4■□□□□ 0.7
CIITAP33076 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CIITAP33076 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CIITAP33076 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CIITAP33076 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CIITAP33076 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CIITAP33076 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.39■□□□□ 0.7
CIITAP33076 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CIITAP33076 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CIITAP33076 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CIITAP33076 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 AL645608.8-201ENST00000606034 2086 ntBASIC19.39■□□□□ 0.69
CIITAP33076 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.39■□□□□ 0.69
CIITAP33076 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CIITAP33076 PMS2P1-201ENST00000431037 1228 ntBASIC19.39■□□□□ 0.69
CIITAP33076 AL591424.1-201ENST00000442569 1213 ntBASIC19.39■□□□□ 0.69
CIITAP33076 DUX4L17-201ENST00000557360 1267 ntBASIC19.39■□□□□ 0.69
CIITAP33076 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.39■□□□□ 0.69
CIITAP33076 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CIITAP33076 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 FRMD8P1-201ENST00000440433 1524 ntBASIC19.39■□□□□ 0.69
CIITAP33076 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CIITAP33076 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
CIITAP33076 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CIITAP33076 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CIITAP33076 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms