Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 MIR943-201ENST00000401286 94 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 AC109635.5-201ENST00000533593 962 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 AC026150.2-201ENST00000564693 1156 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
COL5A1P20908 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.43■□□□□ 0.22
COL5A1P20908 MIR6080-201ENST00000617359 66 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.43■□□□□ 0.22
COL5A1P20908 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL5A1P20908 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.43■□□□□ 0.22
COL5A1P20908 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 AC008677.1-201ENST00000519230 1561 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 FO538757.1-201ENST00000623083 1397 ntBASIC16.43■□□□□ 0.22
COL5A1P20908 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.43■□□□□ 0.22
COL5A1P20908 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL5A1P20908 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL5A1P20908 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
COL5A1P20908 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 SPCS2P4-201ENST00000436160 681 ntBASIC16.42■□□□□ 0.22
COL5A1P20908 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.42■□□□□ 0.22
COL5A1P20908 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.42■□□□□ 0.22
COL5A1P20908 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.42■□□□□ 0.22
COL5A1P20908 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.42■□□□□ 0.22
COL5A1P20908 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.42■□□□□ 0.22
COL5A1P20908 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 LINC02560-201ENST00000596379 459 ntBASIC16.42■□□□□ 0.22
COL5A1P20908 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
COL5A1P20908 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.42■□□□□ 0.22
COL5A1P20908 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.42■□□□□ 0.22
COL5A1P20908 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL5A1P20908 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.41■□□□□ 0.22
COL5A1P20908 HCG4-201ENST00000418983 998 ntBASIC16.41■□□□□ 0.22
COL5A1P20908 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.41■□□□□ 0.22
COL5A1P20908 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.41■□□□□ 0.22
COL5A1P20908 LINC01225-203ENST00000563550 1244 ntBASIC16.41■□□□□ 0.22
COL5A1P20908 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 AC063926.2-201ENST00000623766 1308 ntBASIC16.41■□□□□ 0.22
COL5A1P20908 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.41■□□□□ 0.22
COL5A1P20908 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL5A1P20908 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.4■□□□□ 0.22
COL5A1P20908 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.4■□□□□ 0.22
COL5A1P20908 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 INGX-202ENST00000489074 768 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.4■□□□□ 0.22
COL5A1P20908 ALG1L8P-201ENST00000533887 760 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms