Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIG1P18858 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LIG1P18858 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
LIG1P18858 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.94■□□□□ 0.78
LIG1P18858 ATP5G2P1-201ENST00000433580 426 ntBASIC19.94■□□□□ 0.78
LIG1P18858 MTCL1P1-201ENST00000446207 792 ntBASIC19.94■□□□□ 0.78
LIG1P18858 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.94■□□□□ 0.78
LIG1P18858 AC068472.1-201ENST00000474589 881 ntBASIC19.94■□□□□ 0.78
LIG1P18858 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.94■□□□□ 0.78
LIG1P18858 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.94■□□□□ 0.78
LIG1P18858 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.94■□□□□ 0.78
LIG1P18858 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.94■□□□□ 0.78
LIG1P18858 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LIG1P18858 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIG1P18858 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.93■□□□□ 0.78
LIG1P18858 GUSBP12-201ENST00000513727 720 ntBASIC19.93■□□□□ 0.78
LIG1P18858 AP000867.3-201ENST00000524675 377 ntBASIC19.93■□□□□ 0.78
LIG1P18858 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LIG1P18858 AL592071.1-201ENST00000611956 408 ntBASIC19.93■□□□□ 0.78
LIG1P18858 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
LIG1P18858 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 AC012313.10-201ENST00000623509 926 ntBASIC19.93■□□□□ 0.78
LIG1P18858 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIG1P18858 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.93■□□□□ 0.78
LIG1P18858 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LIG1P18858 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 AC092171.3-201ENST00000610122 2651 ntBASIC19.92■□□□□ 0.78
LIG1P18858 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 AC010460.3-201ENST00000511359 1579 ntBASIC19.92■□□□□ 0.78
LIG1P18858 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
LIG1P18858 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.92■□□□□ 0.78
LIG1P18858 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.92■□□□□ 0.78
LIG1P18858 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.92■□□□□ 0.78
LIG1P18858 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LIG1P18858 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG1P18858 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.91■□□□□ 0.78
LIG1P18858 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG1P18858 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG1P18858 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIG1P18858 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms