Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.69■□□□□ 0.58
CHRNA1P02708 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 FAM86C2P-203ENST00000528684 1004 ntBASIC18.69■□□□□ 0.58
CHRNA1P02708 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.69■□□□□ 0.58
CHRNA1P02708 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.69■□□□□ 0.58
CHRNA1P02708 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.69■□□□□ 0.58
CHRNA1P02708 SPCS2P1-201ENST00000561636 679 ntBASIC18.69■□□□□ 0.58
CHRNA1P02708 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.69■□□□□ 0.58
CHRNA1P02708 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHRNA1P02708 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHRNA1P02708 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.69■□□□□ 0.58
CHRNA1P02708 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.68■□□□□ 0.58
CHRNA1P02708 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA1P02708 HMGA1P7-201ENST00000406908 502 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 SLC25A6P5-201ENST00000435663 894 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 SPDYE11-202ENST00000450699 704 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA1P02708 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA1P02708 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA1P02708 AC243562.1-201ENST00000560672 389 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 SPDYE9P-201ENST00000570642 692 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.68■□□□□ 0.58
CHRNA1P02708 AC011467.4-201ENST00000594891 528 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 SPDYE10P-202ENST00000612005 668 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 SPDYE8P-202ENST00000612377 668 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 AC009093.7-201ENST00000623853 1223 ntBASIC18.68■□□□□ 0.58
CHRNA1P02708 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.68■□□□□ 0.58
CHRNA1P02708 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.68■□□□□ 0.58
CHRNA1P02708 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
CHRNA1P02708 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA1P02708 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHRNA1P02708 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CHRNA1P02708 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHRNA1P02708 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CHRNA1P02708 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
CHRNA1P02708 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 AC133963.1-201ENST00000504166 1679 ntBASIC18.67■□□□□ 0.58
CHRNA1P02708 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.67■□□□□ 0.58
CHRNA1P02708 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 TFAMP1-201ENST00000412727 736 ntBASIC18.67■□□□□ 0.58
CHRNA1P02708 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 AC079140.1-201ENST00000508039 487 ntBASIC18.67■□□□□ 0.58
CHRNA1P02708 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.67■□□□□ 0.58
CHRNA1P02708 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.67■□□□□ 0.58
CHRNA1P02708 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.67■□□□□ 0.58
CHRNA1P02708 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CHRNA1P02708 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHRNA1P02708 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.67■□□□□ 0.58
CHRNA1P02708 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CHRNA1P02708 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHRNA1P02708 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms