Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LDLRP01130 AC036111.1-201ENST00000533973 1582 ntBASIC16.77■□□□□ 0.27
LDLRP01130 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 HLA-A-201ENST00000376802 1334 ntBASIC16.76■□□□□ 0.27
LDLRP01130 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 KRT18P13-201ENST00000400056 1290 ntBASIC16.76■□□□□ 0.27
LDLRP01130 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.76■□□□□ 0.27
LDLRP01130 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.76■□□□□ 0.27
LDLRP01130 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LDLRP01130 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
LDLRP01130 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LDLRP01130 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.76■□□□□ 0.27
LDLRP01130 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
LDLRP01130 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LDLRP01130 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LDLRP01130 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 PMS2P1-201ENST00000431037 1228 ntBASIC16.75■□□□□ 0.27
LDLRP01130 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.75■□□□□ 0.27
LDLRP01130 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.75■□□□□ 0.27
LDLRP01130 MIR3180-5-201ENST00000583743 153 ntBASIC16.75■□□□□ 0.27
LDLRP01130 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.75■□□□□ 0.27
LDLRP01130 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.75■□□□□ 0.27
LDLRP01130 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDLRP01130 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.75■□□□□ 0.27
LDLRP01130 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 AGGF1P2-201ENST00000426656 2106 ntBASIC16.75■□□□□ 0.27
LDLRP01130 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDLRP01130 PCDHA14-201ENST00000506751 2298 ntBASIC16.75■□□□□ 0.27
LDLRP01130 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
LDLRP01130 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
LDLRP01130 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 HLA-F-220ENST00000434407 884 ntBASIC16.74■□□□□ 0.27
LDLRP01130 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 TOB2P1-201ENST00000469761 992 ntBASIC16.74■□□□□ 0.27
LDLRP01130 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.74■□□□□ 0.27
LDLRP01130 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
LDLRP01130 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.74■□□□□ 0.27
LDLRP01130 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LDLRP01130 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms