Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC24■■□□□ 1.43
NPHP4O75161 AC087499.6-201ENST00000411576 835 ntBASIC24■■□□□ 1.43
NPHP4O75161 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC24■■□□□ 1.43
NPHP4O75161 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 RN7SL837P-201ENST00000463010 287 ntBASIC24■■□□□ 1.43
NPHP4O75161 GLI4-203ENST00000517468 963 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC24■■□□□ 1.43
NPHP4O75161 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP4O75161 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC24■■□□□ 1.43
NPHP4O75161 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
NPHP4O75161 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.99■■□□□ 1.43
NPHP4O75161 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC23.99■■□□□ 1.43
NPHP4O75161 AC092552.1-201ENST00000547243 906 ntBASIC23.99■■□□□ 1.43
NPHP4O75161 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC23.99■■□□□ 1.43
NPHP4O75161 AL512343.1-201ENST00000605837 169 ntBASIC23.99■■□□□ 1.43
NPHP4O75161 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC23.99■■□□□ 1.43
NPHP4O75161 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.99■■□□□ 1.43
NPHP4O75161 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
NPHP4O75161 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP4O75161 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 REXO1L11P-201ENST00000620964 1927 ntBASIC23.98■■□□□ 1.43
NPHP4O75161 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
NPHP4O75161 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
NPHP4O75161 AL080243.2-201ENST00000418783 582 ntBASIC23.98■■□□□ 1.43
NPHP4O75161 TTTY23B-201ENST00000442790 549 ntBASIC23.98■■□□□ 1.43
NPHP4O75161 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC23.98■■□□□ 1.43
NPHP4O75161 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
NPHP4O75161 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC23.98■■□□□ 1.43
NPHP4O75161 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.98■■□□□ 1.43
NPHP4O75161 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP4O75161 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC23.97■■□□□ 1.43
NPHP4O75161 MPV17-208ENST00000405076 603 ntTSL 5 BASIC23.97■■□□□ 1.43
NPHP4O75161 CENPM-206ENST00000407253 818 ntTSL 2 BASIC23.97■■□□□ 1.43
NPHP4O75161 AC093004.1-201ENST00000508850 424 ntBASIC23.97■■□□□ 1.43
NPHP4O75161 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC23.97■■□□□ 1.43
NPHP4O75161 SNX29P1-201ENST00000548357 1007 ntBASIC23.97■■□□□ 1.43
NPHP4O75161 BANF1P1-201ENST00000553684 263 ntBASIC23.97■■□□□ 1.43
NPHP4O75161 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC23.97■■□□□ 1.43
NPHP4O75161 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP4O75161 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.96■■□□□ 1.43
NPHP4O75161 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
NPHP4O75161 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
NPHP4O75161 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC23.96■■□□□ 1.43
NPHP4O75161 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
NPHP4O75161 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC23.96■■□□□ 1.43
NPHP4O75161 TMEM14DP-201ENST00000422205 345 ntBASIC23.96■■□□□ 1.43
NPHP4O75161 AC091167.2-201ENST00000579581 588 ntBASIC23.96■■□□□ 1.43
NPHP4O75161 WT1-AS_2.1-201ENST00000613208 137 ntBASIC23.96■■□□□ 1.43
NPHP4O75161 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC23.96■■□□□ 1.43
NPHP4O75161 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC23.96■■□□□ 1.43
NPHP4O75161 BTBD7P1-201ENST00000447253 1453 ntBASIC23.96■■□□□ 1.43
NPHP4O75161 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC23.96■■□□□ 1.43
NPHP4O75161 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP4O75161 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
NPHP4O75161 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.95■■□□□ 1.43
NPHP4O75161 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
NPHP4O75161 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
NPHP4O75161 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC23.95■■□□□ 1.42
NPHP4O75161 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP4O75161 HLA-H-201ENST00000383620 1096 ntBASIC23.95■■□□□ 1.42
NPHP4O75161 PP14571-201ENST00000404327 934 ntTSL 2 BASIC23.95■■□□□ 1.42
NPHP4O75161 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP4O75161 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC23.95■■□□□ 1.42
NPHP4O75161 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms