Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1BO60663 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.24■□□□□ 0.03
LMX1BO60663 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1BO60663 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.24■□□□□ 0.03
LMX1BO60663 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1BO60663 AC046185.3-201ENST00000623228 1824 ntBASIC15.24■□□□□ 0.03
LMX1BO60663 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1BO60663 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1BO60663 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.23■□□□□ 0.03
LMX1BO60663 AC116353.5-201ENST00000638148 1699 ntBASIC15.23■□□□□ 0.03
LMX1BO60663 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 VENTXP7-201ENST00000475503 772 ntBASIC15.23■□□□□ 0.03
LMX1BO60663 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 GUSBP12-201ENST00000513727 720 ntBASIC15.23■□□□□ 0.03
LMX1BO60663 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
LMX1BO60663 AL390719.2-201ENST00000606993 987 ntBASIC15.23■□□□□ 0.03
LMX1BO60663 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
LMX1BO60663 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.23■□□□□ 0.03
LMX1BO60663 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1BO60663 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1BO60663 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1BO60663 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1BO60663 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1BO60663 KRT16P4-201ENST00000453883 522 ntBASIC15.22■□□□□ 0.03
LMX1BO60663 AL139327.4-201ENST00000612362 153 ntBASIC15.22■□□□□ 0.03
LMX1BO60663 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1BO60663 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.22■□□□□ 0.03
LMX1BO60663 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1BO60663 AC016396.2-201ENST00000562575 1417 ntBASIC15.22■□□□□ 0.03
LMX1BO60663 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms