Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SLC28A1O00337 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC28A1O00337 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC28A1O00337 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.68■□□□□ 0.26
SLC28A1O00337 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SLC28A1O00337 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC28A1O00337 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SLC28A1O00337 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SLC28A1O00337 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
SLC28A1O00337 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC28A1O00337 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.67■□□□□ 0.26
SLC28A1O00337 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC28A1O00337 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.67■□□□□ 0.26
SLC28A1O00337 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.67■□□□□ 0.26
SLC28A1O00337 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SLC28A1O00337 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 AC009336.1-201ENST00000608941 1553 ntBASIC16.67■□□□□ 0.26
SLC28A1O00337 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SLC28A1O00337 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SLC28A1O00337 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SLC28A1O00337 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 AC003669.1-201ENST00000334569 611 ntBASIC16.66■□□□□ 0.26
SLC28A1O00337 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SLC28A1O00337 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.66■□□□□ 0.26
SLC28A1O00337 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC28A1O00337 CHCHD2P8-201ENST00000429873 447 ntBASIC16.66■□□□□ 0.26
SLC28A1O00337 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.66■□□□□ 0.26
SLC28A1O00337 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC28A1O00337 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
SLC28A1O00337 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 AC011467.2-201ENST00000598425 242 ntBASIC16.66■□□□□ 0.26
SLC28A1O00337 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 AL121956.5-201ENST00000625261 221 ntBASIC16.66■□□□□ 0.26
SLC28A1O00337 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC28A1O00337 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC28A1O00337 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SLC28A1O00337 AL135999.2-201ENST00000622438 1686 ntBASIC16.65■□□□□ 0.26
SLC28A1O00337 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms