Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 RPL13AP23-201ENST00000480739 586 ntBASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 AC005593.1-201ENST00000624894 515 ntBASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SNX9Q9Y5X1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 RNA5SP415-201ENST00000517246 115 ntBASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 PGM5P2-202ENST00000637225 1043 ntBASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 AF228730.7-201ENST00000641842 219 ntBASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX9Q9Y5X1 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX9Q9Y5X1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 GPR89P-201ENST00000407924 1495 ntBASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX9Q9Y5X1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX9Q9Y5X1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX9Q9Y5X1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX9Q9Y5X1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX9Q9Y5X1 AC104109.2-201ENST00000602919 1418 ntBASIC18.5■□□□□ 0.55
SNX9Q9Y5X1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms