Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 KRT16P4-201ENST00000453883 522 ntBASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 SIGLEC30P-201ENST00000455569 941 ntBASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS9D1Q9Y2B5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AL135999.2-201ENST00000622438 1686 ntBASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AL020989.1-201ENST00000422979 469 ntBASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 MIR5100-201ENST00000579544 119 ntBASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AC093458.2-201ENST00000623150 629 ntBASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 AP000867.4-201ENST00000641616 219 ntBASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS9D1Q9Y2B5 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 NUS1P2-201ENST00000417358 873 ntBASIC17.22■□□□□ 0.35
VPS9D1Q9Y2B5 ABCD1P5-201ENST00000445663 754 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms