Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC007967.3-201ENST00000434308 558 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC091607.1-201ENST00000490318 1060 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AL592071.1-201ENST00000611956 408 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AL139327.4-201ENST00000612362 153 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC116353.5-201ENST00000638148 1699 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 AC092053.1-201ENST00000605787 1936 ntBASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRIM56Q9BRZ2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AGGF1P2-201ENST00000426656 2106 ntBASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 AC019129.2-201ENST00000609837 1235 ntBASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRIM56Q9BRZ2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.68■□□□□ 0.42
TRIM56Q9BRZ2 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms