Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 LAGE3P1-201ENST00000425356 484 ntBASIC17.21■□□□□ 0.35
VPS35Q96QK1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 AL773604.1-201ENST00000617417 272 ntBASIC17.21■□□□□ 0.35
VPS35Q96QK1 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
VPS35Q96QK1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VPS35Q96QK1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 RPS2P28-201ENST00000314255 741 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 MRPL3P1-201ENST00000400109 1033 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 FDX1P1-201ENST00000449115 551 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 AC009078.2-202ENST00000463353 338 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 OR7E14P-202ENST00000530490 1290 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 AC139887.3-201ENST00000568585 713 ntBASIC17.2■□□□□ 0.34
VPS35Q96QK1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS35Q96QK1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS35Q96QK1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 AC097637.2-201ENST00000624096 1997 ntBASIC17.19■□□□□ 0.34
VPS35Q96QK1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 AC026396.1-201ENST00000419388 421 ntBASIC17.19■□□□□ 0.34
VPS35Q96QK1 RPS2P1-201ENST00000434010 821 ntBASIC17.19■□□□□ 0.34
VPS35Q96QK1 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 AC148477.8-201ENST00000624298 468 ntBASIC17.19■□□□□ 0.34
VPS35Q96QK1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS35Q96QK1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS35Q96QK1 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS35Q96QK1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS35Q96QK1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms