Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AL031284.1-201ENST00000419297 478 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 OR7E14P-202ENST00000530490 1290 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AP001005.1-201ENST00000571755 1248 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 AC025062.2-201ENST00000605477 670 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 LYSMD4-203ENST00000378904 2122 ntBASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTCHD1Q96NR3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 HNRNPDP1-201ENST00000439535 754 ntBASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 AC093909.1-201ENST00000504731 1122 ntBASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 HLA-A-201ENST00000376802 1334 ntBASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 PP12613-201ENST00000424958 2230 ntBASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.35■□□□□ 0.21
PTCHD1Q96NR3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 OR6D1P-203ENST00000641209 4860 ntBASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTCHD1Q96NR3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms