Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VMP1Q96GC9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VMP1Q96GC9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.64■□□□□ 0.26
VMP1Q96GC9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 CICP6-201ENST00000457191 2729 ntBASIC16.64■□□□□ 0.25
VMP1Q96GC9 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 AL023806.1-201ENST00000603994 1649 ntBASIC16.64■□□□□ 0.25
VMP1Q96GC9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 TSPY19P-201ENST00000418461 509 ntBASIC16.64■□□□□ 0.25
VMP1Q96GC9 TSPY18P-201ENST00000441642 509 ntBASIC16.64■□□□□ 0.25
VMP1Q96GC9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 AL691432.3-201ENST00000621860 400 ntBASIC16.64■□□□□ 0.25
VMP1Q96GC9 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VMP1Q96GC9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.64■□□□□ 0.25
VMP1Q96GC9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 MST1L-201ENST00000442552 2185 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 AC096582.2-201ENST00000510860 516 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 AC009533.2-201ENST00000543664 586 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 AC091304.2-201ENST00000564639 760 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 AC111152.3-201ENST00000569699 673 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 BNIP3P18-201ENST00000593976 575 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 LINC01711-201ENST00000598340 967 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 AL138831.2-201ENST00000606564 490 ntBASIC16.63■□□□□ 0.25
VMP1Q96GC9 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.63■□□□□ 0.25
VMP1Q96GC9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VMP1Q96GC9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms