Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.68■□□□□ 0.74
ERCC4Q92889 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.68■□□□□ 0.74
ERCC4Q92889 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 AC083849.1-201ENST00000615227 514 ntBASIC19.68■□□□□ 0.74
ERCC4Q92889 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.68■□□□□ 0.74
ERCC4Q92889 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
ERCC4Q92889 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ERCC4Q92889 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.68■□□□□ 0.74
ERCC4Q92889 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.67■□□□□ 0.74
ERCC4Q92889 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.67■□□□□ 0.74
ERCC4Q92889 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.67■□□□□ 0.74
ERCC4Q92889 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.67■□□□□ 0.74
ERCC4Q92889 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 AC092068.3-201ENST00000587894 2016 ntBASIC19.67■□□□□ 0.74
ERCC4Q92889 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.67■□□□□ 0.74
ERCC4Q92889 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
ERCC4Q92889 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
ERCC4Q92889 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC4Q92889 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 NFIC-211ENST00000641145 8399 ntBASIC19.66■□□□□ 0.74
ERCC4Q92889 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
ERCC4Q92889 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
ERCC4Q92889 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC4Q92889 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.66■□□□□ 0.74
ERCC4Q92889 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC4Q92889 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC4Q92889 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC4Q92889 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC4Q92889 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms