Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 AC138907.5-202ENST00000569484 235 ntBASIC10.78□□□□□ -0.68
LINC00643Q86TS7 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 KRT8P32-201ENST00000512863 1461 ntBASIC10.78□□□□□ -0.68
LINC00643Q86TS7 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PRAL-201ENST00000624952 3286 ntBASIC10.78□□□□□ -0.68
LINC00643Q86TS7 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC00643Q86TS7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 PGR-210ENST00000619228 3038 ntTSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.68
LINC00643Q86TS7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 AC106881.1-201ENST00000605849 3329 ntBASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CYP21A1P-202ENST00000354927 1481 ntBASIC10.77□□□□□ -0.69
LINC00643Q86TS7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 AC007191.1-201ENST00000623179 2995 ntBASIC10.77□□□□□ -0.69
LINC00643Q86TS7 AC092437.1-201ENST00000624794 1048 ntBASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC00643Q86TS7 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms