Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 AC099336.1-202ENST00000602961 463 ntBASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 AC093458.2-201ENST00000623150 629 ntBASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF549Q6P9A3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.21■□□□□ 0.34
ZNF549Q6P9A3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.21■□□□□ 0.34
ZNF549Q6P9A3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
ZNF549Q6P9A3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 NKILA-202ENST00000614771 2598 ntBASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AC003669.1-201ENST00000334569 611 ntBASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 POM121L3P-201ENST00000419331 1163 ntBASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 AP000867.4-201ENST00000641616 219 ntBASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF549Q6P9A3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 AC099398.1-201ENST00000567919 2776 ntBASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 KLF4P1-201ENST00000412782 1185 ntBASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 MIR5100-201ENST00000579544 119 ntBASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF549Q6P9A3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms