Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 SPDYE21P-201ENST00000413323 827 ntBASIC20.93■□□□□ 0.94
VPS53Q5VIR6 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 SART3-203ENST00000546611 1184 ntBASIC20.93■□□□□ 0.94
VPS53Q5VIR6 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 AC079776.2-201ENST00000641154 1609 ntBASIC20.93■□□□□ 0.94
VPS53Q5VIR6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS53Q5VIR6 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 RBM17P3-201ENST00000417687 1192 ntBASIC20.92■□□□□ 0.94
VPS53Q5VIR6 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 BX005266.1-201ENST00000473402 457 ntBASIC20.92■□□□□ 0.94
VPS53Q5VIR6 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 NKAPP1-205ENST00000585790 367 ntBASIC20.92■□□□□ 0.94
VPS53Q5VIR6 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 AC104692.2-201ENST00000603054 253 ntBASIC20.92■□□□□ 0.94
VPS53Q5VIR6 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
VPS53Q5VIR6 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 KLF4P1-201ENST00000412782 1185 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 LINC01711-201ENST00000598340 967 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 AC009336.1-201ENST00000608941 1553 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 AC073592.4-201ENST00000623827 446 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 CROCCP1-201ENST00000426910 5675 ntBASIC20.91■□□□□ 0.94
VPS53Q5VIR6 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS53Q5VIR6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS53Q5VIR6 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms