Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.01□□□□□ -0.17
CX3CL1P78423 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.01□□□□□ -0.17
CX3CL1P78423 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CX3CL1P78423 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
CX3CL1P78423 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CX3CL1P78423 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
CX3CL1P78423 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.01□□□□□ -0.17
CX3CL1P78423 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CX3CL1P78423 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.01□□□□□ -0.17
CX3CL1P78423 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
CX3CL1P78423 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 NSUN5P1-202ENST00000421140 1535 ntBASIC14□□□□□ -0.17
CX3CL1P78423 NSUN5P2-203ENST00000457352 1529 ntBASIC14□□□□□ -0.17
CX3CL1P78423 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14□□□□□ -0.17
CX3CL1P78423 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CX3CL1P78423 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14□□□□□ -0.17
CX3CL1P78423 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 IGHV3-47-201ENST00000425060 335 ntBASIC14□□□□□ -0.17
CX3CL1P78423 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14□□□□□ -0.17
CX3CL1P78423 AC012615.1-201ENST00000565797 1299 ntBASIC14□□□□□ -0.17
CX3CL1P78423 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CX3CL1P78423 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 AC011270.2-201ENST00000624293 2550 ntBASIC14□□□□□ -0.17
CX3CL1P78423 AL121761.2-201ENST00000598007 1648 ntBASIC14□□□□□ -0.17
CX3CL1P78423 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CL1P78423 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14□□□□□ -0.17
CX3CL1P78423 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14□□□□□ -0.17
CX3CL1P78423 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14□□□□□ -0.17
CX3CL1P78423 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14□□□□□ -0.17
CX3CL1P78423 TP73-AS1-210ENST00000637775 1455 ntBASIC13.99□□□□□ -0.17
CX3CL1P78423 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CL1P78423 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CX3CL1P78423 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CX3CL1P78423 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CL1P78423 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CX3CL1P78423 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CL1P78423 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 AC122714.2-201ENST00000502787 707 ntBASIC13.99□□□□□ -0.17
CX3CL1P78423 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CL1P78423 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CL1P78423 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CL1P78423 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CL1P78423 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CL1P78423 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC13.99□□□□□ -0.17
CX3CL1P78423 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms