Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PKNOX1P55347 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.04■□□□□ 0.32
PKNOX1P55347 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
PKNOX1P55347 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PKNOX1P55347 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.04■□□□□ 0.32
PKNOX1P55347 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PKNOX1P55347 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.03■□□□□ 0.32
PKNOX1P55347 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 AC010460.3-201ENST00000511359 1579 ntBASIC17.03■□□□□ 0.32
PKNOX1P55347 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
PKNOX1P55347 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.03■□□□□ 0.32
PKNOX1P55347 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.03■□□□□ 0.32
PKNOX1P55347 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.03■□□□□ 0.32
PKNOX1P55347 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.03■□□□□ 0.32
PKNOX1P55347 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.03■□□□□ 0.32
PKNOX1P55347 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PKNOX1P55347 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PKNOX1P55347 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
PKNOX1P55347 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.02■□□□□ 0.32
PKNOX1P55347 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.02■□□□□ 0.32
PKNOX1P55347 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.02■□□□□ 0.32
PKNOX1P55347 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.02■□□□□ 0.32
PKNOX1P55347 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
PKNOX1P55347 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.02■□□□□ 0.32
PKNOX1P55347 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PKNOX1P55347 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.02■□□□□ 0.32
PKNOX1P55347 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.02■□□□□ 0.32
PKNOX1P55347 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PKNOX1P55347 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PKNOX1P55347 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
PKNOX1P55347 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PKNOX1P55347 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.02■□□□□ 0.31
PKNOX1P55347 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PKNOX1P55347 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
PKNOX1P55347 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PKNOX1P55347 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
PKNOX1P55347 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.01■□□□□ 0.31
PKNOX1P55347 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.01■□□□□ 0.31
PKNOX1P55347 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.01■□□□□ 0.31
PKNOX1P55347 SPDYE13P-201ENST00000445314 798 ntBASIC17.01■□□□□ 0.31
PKNOX1P55347 GUSBP12-201ENST00000513727 720 ntBASIC17.01■□□□□ 0.31
PKNOX1P55347 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PKNOX1P55347 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PKNOX1P55347 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms