Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A4P53420 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
COL4A4P53420 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A4P53420 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 AC012317.2-201ENST00000623305 2251 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 AC002056.1-201ENST00000395613 760 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A4P53420 AC005237.2-201ENST00000434368 219 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 AL592309.1-201ENST00000443127 649 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.36■□□□□ 0.53
COL4A4P53420 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A4P53420 AC069120.2-201ENST00000524091 540 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.36■□□□□ 0.53
COL4A4P53420 RARRES2P8-201ENST00000566335 367 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL4A4P53420 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.36■□□□□ 0.53
COL4A4P53420 PI4KAP1-204ENST00000612579 1703 ntBASIC18.36■□□□□ 0.53
COL4A4P53420 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A4P53420 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
COL4A4P53420 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A4P53420 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A4P53420 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A4P53420 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A4P53420 INGX-202ENST00000489074 768 ntBASIC18.35■□□□□ 0.53
COL4A4P53420 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A4P53420 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A4P53420 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A4P53420 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 MIR6080-201ENST00000617359 66 ntBASIC18.35■□□□□ 0.53
COL4A4P53420 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL4A4P53420 AC133963.1-201ENST00000504166 1679 ntBASIC18.35■□□□□ 0.53
COL4A4P53420 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL4A4P53420 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A4P53420 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A4P53420 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A4P53420 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A4P53420 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A4P53420 COX5BP8-201ENST00000416911 349 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A4P53420 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A4P53420 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL4A4P53420 AC025048.6-201ENST00000634326 1161 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A4P53420 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A4P53420 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
COL4A4P53420 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL4A4P53420 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 IGHV3-52-201ENST00000519770 353 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.34■□□□□ 0.53
COL4A4P53420 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A4P53420 SPDYE22P-201ENST00000582158 798 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A4P53420 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A4P53420 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A4P53420 AL355312.1-201ENST00000407115 2176 ntBASIC18.34■□□□□ 0.53
COL4A4P53420 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A4P53420 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A4P53420 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A4P53420 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A4P53420 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
COL4A4P53420 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A4P53420 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A4P53420 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A4P53420 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A4P53420 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A4P53420 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL4A4P53420 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.33■□□□□ 0.52
COL4A4P53420 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A4P53420 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A4P53420 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL4A4P53420 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A4P53420 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms