Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
LIG3P49916 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.28■□□□□ 0.52
LIG3P49916 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.28■□□□□ 0.52
LIG3P49916 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
LIG3P49916 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.28■□□□□ 0.52
LIG3P49916 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
LIG3P49916 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 AC106886.4-201ENST00000623557 2502 ntBASIC18.27■□□□□ 0.52
LIG3P49916 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.27■□□□□ 0.52
LIG3P49916 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
LIG3P49916 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.27■□□□□ 0.52
LIG3P49916 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
LIG3P49916 IGHGP-201ENST00000390555 1178 ntBASIC18.27■□□□□ 0.52
LIG3P49916 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 GPR32P1-201ENST00000601788 811 ntBASIC18.27■□□□□ 0.52
LIG3P49916 AL390719.2-201ENST00000606993 987 ntBASIC18.27■□□□□ 0.52
LIG3P49916 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.27■□□□□ 0.52
LIG3P49916 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.27■□□□□ 0.52
LIG3P49916 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
LIG3P49916 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIG3P49916 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.51
LIG3P49916 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
LIG3P49916 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.27■□□□□ 0.51
LIG3P49916 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIG3P49916 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.26■□□□□ 0.51
LIG3P49916 KRT89P-201ENST00000620027 1478 ntBASIC18.26■□□□□ 0.51
LIG3P49916 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIG3P49916 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIG3P49916 AL136379.1-201ENST00000623471 2642 ntBASIC18.26■□□□□ 0.51
LIG3P49916 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 ATP5G2P1-201ENST00000433580 426 ntBASIC18.26■□□□□ 0.51
LIG3P49916 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.26■□□□□ 0.51
LIG3P49916 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.26■□□□□ 0.51
LIG3P49916 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.26■□□□□ 0.51
LIG3P49916 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 AC132872.4-202ENST00000622924 2756 ntBASIC18.26■□□□□ 0.51
LIG3P49916 AGGF1P2-201ENST00000426656 2106 ntBASIC18.26■□□□□ 0.51
LIG3P49916 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
LIG3P49916 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIG3P49916 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIG3P49916 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LIG3P49916 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 AL024508.2-201ENST00000607749 1894 ntBASIC18.25■□□□□ 0.51
LIG3P49916 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms