Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HOXA1P49639 AC022898.2-201ENST00000616822 1312 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HOXA1P49639 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
HOXA1P49639 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXA1P49639 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
HOXA1P49639 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 AC068587.6-202ENST00000641839 5619 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 PHB2-202ENST00000440277 996 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXA1P49639 TSPY20P-201ENST00000450910 630 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA1P49639 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXA1P49639 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA1P49639 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA1P49639 AC116562.4-202ENST00000641738 218 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
HOXA1P49639 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HOXA1P49639 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA1P49639 AL603756.1-201ENST00000606511 2163 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 AC007326.2-201ENST00000624224 7579 ntBASIC14.43□□□□□ -0.1
HOXA1P49639 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXA1P49639 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA1P49639 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HOXA1P49639 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
HOXA1P49639 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXA1P49639 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 PRORSD1P-201ENST00000295112 541 ntBASIC14.42□□□□□ -0.1
HOXA1P49639 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA1P49639 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
HOXA1P49639 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 AP003071.4-201ENST00000562276 1284 ntBASIC14.42□□□□□ -0.1
HOXA1P49639 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXA1P49639 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
HOXA1P49639 AC008687.5-201ENST00000593746 558 ntBASIC14.42□□□□□ -0.1
HOXA1P49639 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXA1P49639 AC010240.3-201ENST00000607688 395 ntBASIC14.42□□□□□ -0.1
HOXA1P49639 AL023803.3-201ENST00000615559 522 ntBASIC14.42□□□□□ -0.1
HOXA1P49639 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HOXA1P49639 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
HOXA1P49639 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA1P49639 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA1P49639 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms