Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
NKX2-1P43699 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX2-1P43699 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.23□□□□□ -0.13
NKX2-1P43699 AC078925.2-201ENST00000624013 1973 ntBASIC14.23□□□□□ -0.13
NKX2-1P43699 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 AC093525.9-201ENST00000624961 1746 ntBASIC14.23□□□□□ -0.13
NKX2-1P43699 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.23□□□□□ -0.13
NKX2-1P43699 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX2-1P43699 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.22□□□□□ -0.13
NKX2-1P43699 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.22□□□□□ -0.13
NKX2-1P43699 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 AL158047.1-201ENST00000445918 881 ntBASIC14.22□□□□□ -0.13
NKX2-1P43699 AC098590.1-201ENST00000468126 897 ntBASIC14.22□□□□□ -0.13
NKX2-1P43699 SEC1P-202ENST00000473944 940 ntBASIC14.22□□□□□ -0.13
NKX2-1P43699 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC14.22□□□□□ -0.13
NKX2-1P43699 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX2-1P43699 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.22□□□□□ -0.13
NKX2-1P43699 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 AC092068.3-201ENST00000587894 2016 ntBASIC14.22□□□□□ -0.13
NKX2-1P43699 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
NKX2-1P43699 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX2-1P43699 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
NKX2-1P43699 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 AC092053.1-201ENST00000605787 1936 ntBASIC14.21□□□□□ -0.13
NKX2-1P43699 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 ABHD17AP1-201ENST00000358206 933 ntBASIC14.21□□□□□ -0.13
NKX2-1P43699 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.21□□□□□ -0.13
NKX2-1P43699 PEX7-202ENST00000367756 680 ntTSL 3 BASIC14.21□□□□□ -0.13
NKX2-1P43699 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX2-1P43699 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.21□□□□□ -0.13
NKX2-1P43699 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 DECR2-212ENST00000627716 352 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX2-1P43699 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX2-1P43699 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX2-1P43699 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
NKX2-1P43699 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.21□□□□□ -0.14
NKX2-1P43699 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX2-1P43699 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX2-1P43699 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX2-1P43699 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX2-1P43699 AL513523.2-202ENST00000427283 2040 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms