Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HNF4AP41235 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HNF4AP41235 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.83■□□□□ 0.28
HNF4AP41235 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.83■□□□□ 0.28
HNF4AP41235 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.83■□□□□ 0.28
HNF4AP41235 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.83■□□□□ 0.28
HNF4AP41235 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HNF4AP41235 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HNF4AP41235 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.83■□□□□ 0.28
HNF4AP41235 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HNF4AP41235 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HNF4AP41235 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HNF4AP41235 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HNF4AP41235 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.82■□□□□ 0.28
HNF4AP41235 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HNF4AP41235 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.82■□□□□ 0.28
HNF4AP41235 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HNF4AP41235 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.82■□□□□ 0.28
HNF4AP41235 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 CLEC4GP1-201ENST00000596555 870 ntBASIC16.82■□□□□ 0.28
HNF4AP41235 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.82■□□□□ 0.28
HNF4AP41235 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HNF4AP41235 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HNF4AP41235 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HNF4AP41235 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.81■□□□□ 0.28
HNF4AP41235 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.81■□□□□ 0.28
HNF4AP41235 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HNF4AP41235 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 AC003669.1-201ENST00000334569 611 ntBASIC16.81■□□□□ 0.28
HNF4AP41235 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 POM121L3P-201ENST00000419331 1163 ntBASIC16.81■□□□□ 0.28
HNF4AP41235 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.81■□□□□ 0.28
HNF4AP41235 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.81■□□□□ 0.28
HNF4AP41235 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 AD001527.2-201ENST00000622994 785 ntBASIC16.81■□□□□ 0.28
HNF4AP41235 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.81■□□□□ 0.28
HNF4AP41235 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.81■□□□□ 0.28
HNF4AP41235 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HNF4AP41235 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HNF4AP41235 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HNF4AP41235 INTS4P1-201ENST00000438455 1935 ntBASIC16.8■□□□□ 0.28
HNF4AP41235 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.8■□□□□ 0.28
HNF4AP41235 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms